meghatron21

METAL without EFFECT column

1

Hi. I want to perform a meta-analysis across 5 studies; however, they might have underlying biological differences and thus different effect sizes; but I just want to evaluate if variants...

Merging mixcr scRNA-seq output with Seurat data

1

Hi. I have 10X genomic 5' scRNA-seq fastq files. I ran mixcr like so: ~/mixcr analyze 10x-5gex-full-length --species hsa $sample\_R1_001.fastq.gz $sample\_R2_001.fastq.gz $output/$sample I exported clones like so: ~/Programs/mixcr exportClones --split-by-tags...

chr region to bam file

1

Hi. I'm trying to run polysolver on bam files already aligned by someone else. I'm getting the following error: [bam_parse_region] fail to determine the sequence name. [main_samview] region "6:29941260-29945884" specifies...