Matt Shirley

[Cycler](http://matplotlib.org/cycler/) replaces the older `axes.color_cycle` in matplotlib >= 1.5

https://github.com/ewels/MultiQC - What test FASTQ files should I run with? - Need to submit log files from test run to https://github.com/ewels/MultiQC_TestData From @ewels: ## If you're requesting a new module...

See #20

This is something FastQC does automatically.

Multiple input files should be handled as a batch where one file corresponds to one set of figures and data tables.

I'd like to test importing across multiple experiments into Spotfire for visualization. This should just involve concatenation of multiple results tables.

Summarize methylation statistics from bisulfite DNA-seq libraries

1

Some recent BS-seq programs store methylation information in a SAM tag. One example is [Bismark](http://www.bioinformatics.babraham.ac.uk/projects/bismark/Bismark_User_Guide.pdf). A flag for `--methylation` would activate routines for summarizing: - [X] Cycle-specific CpG cytosine methylation...