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Published 20 hours ago • verified publisher icon mdshw5

Summarize methylation statistics from bisulfite DNA-seq libraries

Open mdshw5 opened this issue 10 years ago • 1 comments

Some recent BS-seq programs store methylation information in a SAM tag. One example is Bismark. A flag for --methylation would activate routines for summarizing:

  • [X] Cycle-specific CpG cytosine methylation
  • [x] Cycle-specific cytosine conversion
  • [ ] Methyl-C content percent per read

mdshw5 avatar Dec 30 '13 19:12 mdshw5

Since there are only a few data formats for representing methylation data from bisulfite sequencing, flags for --bismark, --bsmap etc.. might be useful.

mdshw5 avatar Jan 21 '15 18:01 mdshw5