fastqp

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I'd like to test importing across multiple experiments into Spotfire for visualization. This should just involve concatenation of multiple results tables.

mdshw5

Summarize methylation statistics from bisulfite DNA-seq libraries

1

Some recent BS-seq programs store methylation information in a SAM tag. One example is [Bismark](http://www.bioinformatics.babraham.ac.uk/projects/bismark/Bismark_User_Guide.pdf). A flag for `--methylation` would activate routines for summarizing: - [X] Cycle-specific CpG cytosine methylation...

mdshw5

mdshw5

``` Traceback (most recent call last): File "/usr/prog/scicomp/pythonds/v1.0/pyds_v1.0/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap self.run() File "/usr/prog/scicomp/pythonds/v1.0/pyds_v1.0/lib/python3.8/multiprocessing/process.py", line 108, in run self._target(*self._args, **self._kwargs) File "/da/onc/BFx/pisces/0.1.5.3/src/novartis-pisces/pisces/__init__.py", line 135, in read_level_qc run(arguments) File "/da/onc/BFx/pisces/0.1.5.3/lib/python3.8/site-packages/fastqp/cli.py",...

mdshw5