Mikhail Dozmorov
Mikhail Dozmorov
Hello. I started with the [Loading 10x Genomics Data](https://immunarch.com/articles/web_only/load_10x.html) tutorial, downloaded the CSV files from [10X website](https://support.10xgenomics.com/single-cell-vdj/datasets/3.0.0/vdj_v1_mm_c57bl6_pbmc_t?) and ran `immdata_10x
[hicInterIntraTAD](https://hicexplorer.readthedocs.io/en/latest/content/tools/hicInterIntraTAD.html) seems to be very useful; however, I immediately ran into the division by zero error. Is it possible to account for such (likely, frequent) events? ```bash ERROR:hicexplorer.hicInterIntraTAD:division by zeroTraceback...
Running python setup.py install gives: error: file '/home/.../apps/taolib/Scripts/cutoff.py' does not exist And installation breaks. How to get past it?
When using Rstudio, zooming the aheatmap using "Zoom" button on the "Plots" tab leads to zooming the plot but not the dendrogram. Snapshot attached. Resizing the window cripples the dendrogram...
Reproducible on Ubuntu, Xubuntu 14.04, as VMs on VirtualBox 1) Installing `gitbook` via installGitbook() function results in ``` sudo: no askpass program specified, try setting SUDO_ASKPASS Error in installGitbook() :...
### Description of feature The "CONTROL" option description in the "[samplesheet input](https://nf-co.re/atacseq/2.1.2/docs/usage#samplesheet-input)" section needs to be improved. 1. What exactly the control option does? From the description, it appears "CONTROL"...
### Description of the bug This issue is identical to #218, which was closed but not resolved. After debugging, the problem is that the `data` object being supplied to `DGEList(counts=data,genes=rownames(data))`...
### Description of the bug Hi. I'm interested in trying this pipeline, but running into issues. The main one is the error immediately after running: ```{bash} ERROR ~ toIndex =...
### Description of the bug This issue appears in various forms in other issues, but I could not find a workable solution. This error occurs when running the pipeline with...