Michael Doube
Michael Doube
BoneJ's Fractal Dimension plugin uses an Op to do the box-counting maths. On larger images with many boxes to count, it adopts a multithreading approach, using a standard call to...
https://github.com/imagej/imagej-ops/blob/010510b4ccd9a8892ba65c17f3c80459dbc163ca/src/main/java/net/imagej/ops/topology/eulerCharacteristic/EulerCharacteristic26NFloating.java#L223 This loop runs in a single thread, but could easily be multithreaded via a multithreading class or parallel Streams. BoneJ1 used a multithreading class where each thread iterated over...
[fiji/Stack_Manipulation](https://github.com/fiji/Stack_Manipulation/tree/master/src/main/java) is a set of plugins that do basic stuff to slices, e.g. removing, sorting, interleaving and de-interleaving. The functionality is so generic as to warrant an Op in core...
Changes proposed in this pull request: * update versions of python, numba and numpy * fix warnings from numpy and scikit Fixes issue #27 (or at least, I cannot reproduce...
**Describe the bug** [Example 01: Train a network for regression](https://dmpelt.github.io/msdnet/auto_examples/train_regr.html#sphx-glr-download-auto-examples-train-regr-py) and [Example 05: Train a network for regression (tomography)](https://dmpelt.github.io/msdnet/auto_examples/train_regr_tomography.html#sphx-glr-auto-examples-train-regr-tomography-py) fail with ```AttributeError: 'NoneType' object has no attribute 'deriv'``` It looks...
A change introduced by `pom-scijava 36.0.0` https://github.com/scijava/pom-scijava/releases/tag/pom-scijava-36.0.0 leads to tests of BoneJ user interaction that use Mockito, failing. This is a stub to track https://github.com/bonej-org/BoneJ2/issues/341
IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING BME VOL 61; NUMB 7 (2014) pp.2057-2069 A Robust Algorithm for Thickness Computation at Low Resolution and Its Application to In Vivo Trabecular Bone CT...
3D ROI manager is a new functionality which may have advantages over the current 'stack of 2D ROIs' approach.
Maybe numbers shown in viewer or clickable branches, to allow relating to results in result table. Possibly could use same backend as particle analyser 3D viewer / result table interactivity?...
Need a web page spelling out the privacy policy - what data are collected, how they are stored, who can see them, what they are used for and how to...