Michael Dondrup

Search cancelled

8

I am trying to analyze MS data from our proteomics facility with searchGUI but the search is interrupted each time. `Error: Source '2022-11-16_Exploris480_P22-41_2665/Raw/Cement1.comet.pep.xml' does not exist. I tried to deactivate...

Gene imported with GFF importer have no sequence

21

### Tripal Version 4.x HEAD ### Drupal Version 10.2.4 ### PostgreSQL Version 15.6 (Debian 15.6-0+deb12u1) ### PHP Version 8.2.7 ### General Description I am setting up a Tripal 4 site...

Chado fields cannot be added to content types

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### Tripal Version 4.x HEAD commit: dcef113c9c46bdc77d17d013973e347ce809d6ed ### Drupal Version 10.2.4 ### PostgreSQL Version 15.6 (Debian 15.6-0+deb12u1) ### PHP Version 8.2.7 ### General Description Chado fields cannot be added to...

How to search for Tripal Content?

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### Discussion or Question I am trying to search for Tripal 4 content, e.g. genes but Tripal content doesn't show in the site search. How to enable search options, modules...

Remove uniqueness constraint on Analysis Program+version?

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### Tripal Version 4.x HEAD ### Drupal Version 10.2.4 ### PostgreSQL Version 15.6 (Debian 15.6-0+deb12u1) ### PHP Version 8.2.7 ### General Description It is not possible two create multiple analyses...

Tripal Extensions Access Denied

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### Tripal Version 4.x HEAD ### Drupal Version 10.2.4 ### PostgreSQL Version 15.6 (Debian 15.6-0+deb12u1) ### PHP Version 8.2.7 ### General Description admin/tripal/extension shows Access Denied for the site site...

Any advice on how to create a haplotype-resolved assembly form the phase FastQ reads

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I now have phased nanopore reads from nPhase. Thank you very much for the tool and your help so far. Now, the task is to generate a first haplotype-resolved assembly....

nphase takes a long time at GATK step

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I am now running nPhase on my real data and noticed it takes a very long time to finish. My data is yeast ONT reads with ~120X coverage and Illumina...