Michael Dondrup

Thank you. I will try with a GFF with Fasta portion. I noticed also that the Fasta importer needs regular expression `^(.*?)\s\.*$` to parse FASTA headers properly for this RefSeq...

After loading the sequence ontology and Type collections, there is a little more information displayed. I made a small GFF file with FASTA section for testing. Sequence coordinates are displayed...

I vote in support of this issue. The temporary storage required when analyzing raw reads appears excessive due to redundancy and may lead to most of the "No space left...

Hi Harald, thanks for your help so far. I have changed the FASTA headers and I have now managed to run the Comet analysis but it needed a little workaround....

Now, the next tool that is failing is MetaMorpheus. There, I just get Error:null ``` Tue Nov 29 12:55:07 CET 2022 Converting raw files. Tue Nov 29 12:55:07 CET 2022...

Then, there is another error from Tide, seemingly there are too many CPUs (144 threads) on that machine. ``` Tue Nov 29 13:14:52 CET 2022 Converting spectrum file Cement1.mzml for...

> Can you check the SearchGUI log file? You'll find it in the SearchGUI-4.1.23\resources folder. It's just named SearchGUI.log. Hopefully there will be a longer stack trace there that will...

> Here is the specific test: https://github.com/compomics/compomics-utilities/blob/a6be2db5f904652c2531ac47cc3eb69f8c16c473/src/main/java/com/compomics/software/CompomicsWrapper.java#L938 > Any idea why this is returning true on kjempefuru? I am using conda even though I didn't install searchgui through it. I...

I have also stumbled over this. I am adding a detailed error log. I think that the incompatibility of accelerated PairHMM with a tmp directory mounted noexec should be mentioned...

OK, I see. The reason I am asking is that we need to migrate our system to a new framework before Drupal 7 EOL at 5.1.2025. I prefer to build...