mdmiller53

when we saw a presentation from @gaurav-kaushik at the ```Cloud & GDC Workflow Portability Working Group``` on 4/12, running a workflow from composer seemed definitely in the feature list. this...

here's a snippet of how TCGA classifies tissues. the total number of combinations is 188: ``` mysql> select sampletype, tissue_anatomic_site, tissue_anatomic_site_description, count(*) ct from metadata_biospecimen where tissue_anatomic_site in ('Head/Neck', 'Eye',...

yes, the changes in #710 look fine to me. still minorly concerned whether OntologyTerm needs to be richer (i.e. allow qualifying OntologyTerms and OntologyValues) but that's a different discussion and...

so minorly confused here, are we considering this issue or #725 or both for voting?

for consistency, it might be good to have a companion best practice documentation for the different types. for instance 'for cell lines, these are the recommended ontology fields, for metagenomics...

@brucehoff in an implementation i did, i tried a layered approach. the workflow engine ran on a server, it took requests to start workflows and returned a token that could...

@johnnoone i defined the prefix like: `provider = FilesystemProvider(json_config['api_config_dir'], 'cur:config')` then the file i wanted to reference was named 'test_cohort_api.json'. the problem looks like it doesn't matter how the files...