mdbarnesUCSD

Thanks for reaching out, @azhark2 added support for PURPLE file format in v1.2.9 release.

Please update to v1.1.14, the issue should be resolved in that update. Thanks!

Hi @mattiyeh, Thanks for reaching out about this issue with processing ICGC files. Could you please provide an example file to showcase the behavior? Thanks!

Hi Marc, Apologies that we haven't been able to get to this issue yet. Were you able to find a solution for processing ICGC input files? If you have tested...

Hi @llecompte and @grantn5, Thanks for reaching out. Please use pandas < 2.0.0 until the code can be updated to support pandas >= 2.0.0.

Hi @toddajohnson, Thanks for letting us know that as of SigProfilerMatrixGenerator v1.2.25 that SciPy 1.12.0 breaks the code. We will look into updating this dependency.

Hi both, There may be some issues that crop up due to dependency requirements and deprecations. We mostly test with Python 3.11, so if you come across any issues with...

Hi @mattiyeh, Thanks for reaching out again about the issue you encountered with ICGC input files. It would be a great help if you could please provide an input file...

Thanks for the feedback! This is something that we are hoping to have in a future release. We will update here when it is ready.

There are some issues that originate from the default behavior for SigProfilerMatrixGenerator and SigProfilerPlotting because of how they save and load files from site-packages. There are some updates that we...