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                                            mdbarnesUCSD

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For simulating mutations in chrY, I need whether number of mutations in chrY is greater than zero using SPMG.

Thanks for sharing the command and files for reproducing the issue. I tested with `chrom_based=False` and a standard matrix was returned and no chrom_based files were generated. I suspect the...

For simulating mutations in chrY, I need whether number of mutations in chrY is greater than zero using SPMG.

It seems that there are two things that may be happening. If you want a matrix file for the mutations on chromosome Y, then you will need to run `chrom_based=True`....

For simulating mutations in chrY, I need whether number of mutations in chrY is greater than zero using SPMG.

Please re-open if you are still encountering issues.

For simulating mutations in chrY, I need whether number of mutations in chrY is greater than zero using SPMG.

The [v1.2.31 release](https://github.com/AlexandrovLab/SigProfilerMatrixGenerator/releases/tag/v1.2.31) resolves the issue of the matrices not being returned. The number of mutation on ChrY can be determine by reading the corresponding files immediately after the SPMG...

mdbarnesUCSD

For simulating mutations in chrY, I need whether number of mutations in chrY is greater than zero using SPMG.

For simulating mutations in chrY, I need whether number of mutations in chrY is greater than zero using SPMG.

For simulating mutations in chrY, I need whether number of mutations in chrY is greater than zero using SPMG.

For simulating mutations in chrY, I need whether number of mutations in chrY is greater than zero using SPMG.

For simulating mutations in chrY, I need whether number of mutations in chrY is greater than zero using SPMG.

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