Michael Baudis

Results 271 comments of Michael Baudis

See older discussions https://github.com/monarch-initiative/mondo/issues/1148#issuecomment-1013554769 Briefly: For progenetix.org we have done "a bit" of mapping between NCIt and ICD-O Morphology+Topography combinations. This mostly has been done to utilize the NCIt hierarchies...

@matentzn Feel free - as a first step ... I'm really from a different area & haven't found time to work on mapping formalities etc. But there has been a...

Also seems like a great opportunity to do this in conjunction with ICGC ARGO metadata work @mcourtot ?!

@matentzn ... and FYI all term groups for NCIT / ICD-O we have are in `response.results.termGroups` through (2022-08-26: fixed wrong icdo partial)

@matentzn Not daft at all - this is just an _ad hoc_ way to express equivalency of terms from different classification systems, w/o assuming a 1:1. _I.e._ for NCIt ICD-O...

That's what I thought but wanted some confirmation ... > One approach we could take here is to create an OWL file that materializes these expressions. They could have IDs...

@matentzn Regarding UBERON ICD topographies: This had been done by @qingyao and is documented at . OBO file & score etc. available - so this should be usable...

I have created a [map](https://github.com/progenetix/byconeer/blob/main/rsrc/NCIT/icdom_ncit_progenetix_mappings.tsv) with concatenated codes which uses: * the simple pairs for all ICD-O morphologies from the NCIT-ICD-O M mappings provided by NCI here * the different...

@ahwagner Great comments; supporting the "high level" statement with some literature/references is an obvious need (as are some other definitions - I just wanted to provide a draft for discussions...);...