Michael Baudis

Results 271 comments of Michael Baudis

@redmitry No - filters were originally designed as being self scoped, basically only ids.

@jrambla If we just say that "CURIE ... e.g. ontology term ids or prefixed identifiers" that's fine but as you experienced the filteringTerms endpoint then could flood the response (as...

No; you want to point to the source for resolving the identifier and see e.g. info from [identifiers.org for pubmed](https://registry.identifiers.org/registry/pubmed). Although the `Resource` definition in the `beaconFilteringTermsResults` is misleading/overdoing it...

Picking this up again. Additional thoughts: * if we accept (and document) that `OntologyFilter` applies to anything "hierarchical classification system" (see e.g. my example for [cellosaurus](https://cellosaurus.org) cell line identifiers -...

@redmitry But isn't the `returnedSchemas` part in `meta` doing this? https://github.com/ga4gh-beacon/beacon-v2/blob/47af89c8fd199d2674e5ca7fb504815ebc145e63/framework/src/responses/sections/beaconResponseMeta.yaml#L11 At least that's what I thought & we're doing it like that: https://progenetix.org/beacon/biosamples?testMode=true ``` "returnedGranularity": "record", "returnedSchemas": [ {...

IMO this can be PR'd. Either a typo or a C&P from an older Phenopackets version (just guessing)? Now at least `measurements` in [Phenopackets](https://phenopacket-schema.readthedocs.io/en/latest/phenopacket.html#phenopacket). @costero-e Can you PR this into...

Closing this due to https://github.com/ga4gh-beacon/beacon-v2/pull/229

@M-casado If I remember correctly this was done since one rarely has an absolute date or time but frequently a relative one like an age (however the use of `timeElement`...

@M-casado Thanks for the nice write-up. I totally support HANCESTRO use and have a clear ethnicity definition with a separate definition of the "race" data (which unfortunately is something frequently...

This looks like an interesting catch-all since one can combine the different assertions in one parameter and then filter by method. So if one has e.g. a 7 ancestries model...