Matthias König
Matthias König
Hi all, I want to write formulas for my equation using the library. In the example it seems that I have to write the MathML by hand !? See for...
A problem I noticed with the python bindings is that there are many functions which are named like attributes. This can create many problems in a dynamic typed language like...
When trying to flatten some simple comp models I get errors for the following files: [comp.zip](https://github.com/sbmlteam/jsbml/files/4650900/comp.zip) Flattening is performed via ``` doc = SBMLReader.read(file); CompFlatteningConverter compFlatteningConverter = new CompFlatteningConverter(); docFlat...
cleanup empty annotations
Conditions should be calculable based on the model variables and parameters. E.g. I want to change S1 to 2*S1 in a condition. I.e. formulas should be allowed in the condition...
The test takes much too long to run. This creates a ton of problems. E.g. very long travis runtimes and also very long runtimes for the local tests. Tests should...
SBSCL has a working FBA model solver. As part of the recent HARMONY we developed basic FROG guidelines. See also https://github.com/matthiaskoenig/fbc_curation/. SBSCL should support the generation of these files for...
Currently some of the comp tests are failing due to problems with flattening. Issue is reported here: https://github.com/sbmlteam/jsbml/issues/213
Hi all, I have an SBML model with an initial assignment from a uniform distribution (model attached). [spt_random.zip](https://github.com/sbmlteam/libsbml/files/14117972/spt_random.zip) Despite having set the units on the distributions I get a unit...
Hi all, Two of the key functions to write algorithms and utilities based on libsbml are the `getElementBySId` and `getElementByMetaId` functions. This functions run in O(n) with n being the...