Matthew Parker

MotifSeq output all hits

1

We'd like to examine multiple motifs in the same read so it would be useful if MotifSeq could output more than just the top hit! Thanks!

Example Site Not Working

1

Hello, I don't know i f this project is still live but I was hoping to take a look. The example site seems to be down though? Thanks Matt

VBZ fast5 results in failure to read fast5

2

Newer versions of MinKNOW now compress fast5 files with VBZ compression which causes `strique.py count` to fail. Nanopore have provided an updated hd5 plugin to handle VBZ, however I'm struggling...

Dealing with concatemers

2

Hi, I've noticed with things like plasmid sequencing you sometimes get concatemers, when this happens STRique often predicts massive repeats which span multiple copies of the plasmid from the left...