Matthew Nguyen

icon indicating a website link https://matnguyen.github.io/

icon company @schatzlab icon location Baltimore, Maryland icon location PhD Student @ Schatz Lab | Johns Hopkins University

Results 4 issues of Matthew Nguyen

Node zooming animation looses sense of verticality

3 comment

The current animation when zooming into a node looses its sense of verticality and centre of attention as it moves towards its target. Ideally, the camera should maintain its upright...

Roary plot takes a long time to run

Hello, What is the expected time it takes to run roary_plots.py. I have been running for 24 hours on 250 genomes, and still has not completed. Thank you

Expected memory usage

4 comment

What's the expected memory usage per genome for Dashing2? I'm trying to run it on 500,000 viral isolates, and am running out of memory even with 500GB

Import error when running `conda mambabuild`

The following error is produced when running `conda mamba build` ```Traceback (most recent call last): File "/home/mnguyen/anaconda3/bin/conda-mambabuild", line 7, in from boa.cli.mambabuild import main File "/home/mnguyen/anaconda3/lib/python3.8/site-packages/boa/cli/mambabuild.py", line 15, in from...