Matthias Munz

Duplication rate differs up to 30% from that of Fastqc for single end reads

7

I found a quite big difference in the duplication between Fastp and Fastqc. For all my ~40 SE RNAseq samples, the rate is around 10-30% lower in Fastp compared to...

When querying an endpoint of a REST API I set up with R/plumber, I experience substantial time differences between `R/httr`, `R/curl` and `download.file`. While `download.file` takes around 8 seconds, `httr`...

Allow to transmit paramaters in request body in Swagger UI

2

Requests with very long parameter values sent from the Swagger UI return the error: ```R 414 Request-URI Too Large ``` This is because the URI is limited in length. To...

verifyBamID can't handle missing trailing fields of sample

3

I just analyzed a VCF file created with GATK 3.8 pipeline and got the following error: ``` terminate called after throwing an instance of 'VcfFileException' what(): # values = ./.:0,0,0:.:.:0|1:18576120_T_C...

1: `select_()` is deprecated as of dplyr 0.7.0. Please use `select()` instead. 2: `arrange_()` is deprecated as of dplyr 0.7.0. Please use `arrange()` instead. 3: `filter_()` is deprecated as of...

1: `select_()` is deprecated as of dplyr 0.7.0. Please use `select()` instead. 2: `arrange_()` is deprecated as of dplyr 0.7.0. Please use `arrange()` instead. 3: `filter_()` is deprecated as of...