Matt Aton
Matt Aton
A continuation of PR #949, this PR adds support for Windows. All issues revolve around two things: 1) File path separators differing between operating systems. `/` vs. `\` 2) Temporary...
This PR will implement the sequence alignment path data structure as outlined in issue #1974. Please complete the following checklist: * [ ] I have read the [contribution guidelines](https://scikit.bio/contribute.html). *...
In `skbio/io/tests/test_util.py` there are 6 tests which fail when running on Windows. All of them have to do with the contents of a compressed file not matching between Windows and...
In `skbio/stats`, the function `subsample_counts` and it's underlying Cython function `_subsample_counts_without_replacement` throw the following errors when run on Windows systems: ```` ====================================================================== ERROR: test_subsample_counts_nonrandom (__main__.SubsampleCountsTests.test_subsample_counts_nonrandom) ---------------------------------------------------------------------- Traceback (most recent call...
The `Makefile` in the root directory is a bit dated. We'll need to improve it at some point.
Right now, skbio has four separate files for our requirements. The reason for this is to minimize installations for various parts of the CI workflow. For instance, the documentation portion...
This PR should hopefully resolve the issue described in #2088. @qiyunzhu I'm not sure if I'm able to test if this works there, because I don't have maintainer access on...
This PR addresses #2026 by adding unit tests to ensure module imports as well as specific format exceptions are covered. Please complete the following checklist: * [x] I have read...
Addresses #2020 Please complete the following checklist: * [x] I have read the [contribution guidelines](https://scikit.bio/contribute.html). * [ ] I have documented all public-facing changes in the [changelog](https://github.com/scikit-bio/scikit-bio/blob/main/CHANGELOG.md). * [ ]...
Scikit-bio currently has somewhat slow import times. Here are some rough import times on my machine of various packages. All times represent the execution time of `import `: | Package...