Matt Aton

@wasade Essentially it looks like there are two scenarios. One where all the tests in whichever `test.py` file require the temporary files. In this case, the `setUp`/`tearDown` solution I feel...

@wasade Your suggested changes make sense, and there was actually already a `to_remove = []` in the `setUp` functions that I didn't notice previously, which I used. Just had to...

Happy to contribute!

There are very similar, but slightly different errors occurring in the `_tip_distances` function in `diversity/beta/_unifrac.py` and the associated Cython code. ```` ====================================================================== ERROR: test_weighted_normalized_root_not_observed (__main__.UnifracTests.test_weighted_normalized_root_not_observed) ---------------------------------------------------------------------- Traceback (most recent call...

It's not a long term solution, but the desired functionality is possible currently if you do the following: ```python import skbio import sys for r in skbio.read(sys.stdin, format='fasta', verify=False): print(r.metadata['id'])...

@qiyunzhu @mortonjt This PR is more than 90% completed. A preliminary review would be appreciated.

@qiyunzhu One question I have regarding `align_scores` or calculating a matrix of pairwise alignment scores from an MSA: If at a single position in the pairwise alignment there are gaps...

@qiyunzhu @mortonjt I believe this PR is ready for the final round of review. As an update from the initial round, there have been a few major changes. Most notably,...

Hi @zsjmbz, I know this error may occur if [gcc](https://gcc.gnu.org/) is not installed. You can try checking that with `gcc --version`, and installing if necessary.

@qiyunzhu My hunch is that somehow conda-forge's build is seeking to the 4th byte in the file, when it should only be seeking to the 3rd. I've written a new...