Marvin Jens
Marvin Jens
snakemake support 'services' https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#service-rules-jobs which can be started and stopped. Sounds like a perfect fit for loading the STAR genome index and releasing it again after the last instance has...
spacemake config delete_species --name NAME --reference REF does not work. Instead of deleting only the designated REF it complains that --reference is not a valid argument. That is at least...
Currently, no validation of the `map_strategy` string is performed when adding or updating a sample. If a reference is used that does not exist in the `config.yaml`, this triggers a...
The 'drop-dropseq' development branch and 'master' have moved very far apart. This makes it difficult and error-prone to merge other developments against master (e.g. Daniels spatial work) into both branches...
# Replacing dropseq-tools BamTagHistogram This tool has become a pain-point as we now routinely have hundreds of millions of legitimate, spatial barcodes in open-st data. This PR features a complete,...
# Finally! Updating `master` with a ton of previous work This PR merges a lot of our work over the past months on master and - in parallel - on...