Martin Schorb
Martin Schorb
During my conversion, I call `make_bdv` without any specific `downscale_mode`. Since when is the default `nearest`? I guess that should be what was used here... So maybe it has instead...
just talked to @tischi In this case it is happening on the viewer side.
Hi, when I run make_bdv with overwrite=False and the specified view setup already exists, it should do exactly that: update the metadata only. Is that what it anyway does? Otherwise...
[fm_r1.zip](https://github.com/constantinpape/pybdv/files/4491984/fm_r1.zip)
Hi, I run with ``` overwrite = 'metadata'``` setupid exists, so we should be clearly in case4 : ``` # 4: setup id and time-point are present and over-write mode...
wait.... could be a mistake on my side. Sorry... But I found another issue with 2D data (now individual image) ``` File "c:\users\schorb\pybdv\pybdv\converter.py", line 433, in make_bdv factors = [[1,...
Sorry.... wrong version
I provide it as tuple (I think I saw that somewhere in your code...): ``` downscale_factors = ([1,2,2],[1,2,2],[1,2,2],[1,4,4]) ``` If I provide is as list/array: ``` downscale_factors = [[1,2,2],[1,2,2],[1,2,2],[1,4,4]] ```...
OK, I think I fixed my tile issue from above. But now... ``` File "c:\users\schorb\pybdv\pybdv\converter.py", line 409, in make_bdv attributes_ = validate_attributes(xml_path, attributes, setup_id, enforce_consistency) File "c:\users\schorb\pybdv\pybdv\metadata.py", line 503, in...
Is there any way that allows me to create a new XML with pybdv without re-writing the h5? Assume we have a giant data set like the platy. Now we...