Martin Jinye Zhang

icon indicating a website link http://martinjzhang.github.io icon indicating an email [email protected]

icon company Carnegie Mellon University icon location Pittsburgh icon location Assistant Professor @CMU_CompBio | Postdoc@HSPH | PhD@Stanford_EE | statistics, genetics, combio | develop practical and statistically rigorous methods.

Results 4 issues of Martin Jinye Zhang

Update dependencies of scDRS

scDRS may not be compatible with number 1.24.4: > ERROR tests/test_CLI.py - AttributeError: module 'numpy' has no attribute 'long'

bug

Remove NA values in corr anlaysis

Negative weights in munge-gs

1. Check if the weights are negative. 2. Add description to emphasize the z-scores should be one-sided.

scDRS breaks if using all scRNA-seq genes as disease genes

Some users may use all scRNA-seq genes as the trait gene set as some sort of negative control. scDRS produced miscalibrated results in this case due to numerical issues. -...

enhancement