Martin Steinegger
Martin Steinegger
With the change from MMseqs2 release 12 to 13 the `taxonomy` workflow does report unclassified reads/contigs anymore. This is an unwanted breaking change.
The reason for this are differences in parameter. - Foldseek default parameter: `--max-seq 300 -e 0.001` - Webserver `--max-seqs 1000 -e 0.1`
[AlphaFold2](https://github.com/deepmind/alphafold) is heavily used by the life science community to predict protein structures. AlphaFold is written in Jax and already runs on CPUs. However, it would be amazing to have...
In the current "All databases" view of foldseek, results from various databases are separated. It would be beneficial to have an integrated view that ranks results from all databases by...