Martin Steinegger

It is still in heavy development by @Woosub-Kim. The output fields are the following: ``` (1) query complex id (2) target complex id (3) chain matched in query (4) chain...

We will add this in future as support to easy-cluster

We currently do not store any annotations per database. To gather this information, you would need to download the meta-data for each database. Having the annotations might be a great...

What version do you use? I tried the most recent commit and could not reproduce this issue.

Could it be that you do not have a Calpha database?

Below is what the code currently look like. This does not require the `--sort-by-structure-bits 0`. ``` bool needTMaligner = (par.tmScoreThr > 0); bool needLDDT = (par.lddtThr > 0); if (par.sortByStructureBits)...

This is a good idea. I label it as enhancement.

@pengtb any update on this?

@Raul-araya-secchi Foldseek was meant to cluster huge collection of diverse protein structures. However, you could try to use the parameter `--tmscore-threshold`.

@ZiyaoLi could you please share the PDB files of the `data` folder?