Marcel Martin

With the changes from PR #418, the numbers look like this: threads | wall-clock time [s] | CPU time [s] | CPU usage | est. mapping-only CPU usage -|-|-|-|- 32...

Awesome! Not sure if you saw it, but strobealign 0.14.0 has built-in support for igzip. If you wanted to, you could therefore omit the `

I think it’s time to close this issue with #418 now implemented. Regarding my earlier comment that "it may make sense to use an instance with 128 cores", I wanted...

Interesting. Where do these tab characters come from? Looking at some of the Nanopore data that I have here, I don’t see any. If possible, I try to avoid adding...

Quoting from the read header you attached: ``` @54c591fa-c560-405b-bc82-b3cd603b84fc st:Z:2024-10-17T01:47:46.145+00:00 RG:Z:bf71225953a48fb33134df81086f6e5d64deeca6_dna_r10.4.1_e8.2_400bps_sup@v5.0.0 DS:Z:gpu:NVIDIA GeForce RTX 3070 Laptop GPU ``` This is apparently intended to be used by a read mapper to...

Hi, can you say for what you would want to use the bindings? The bindings exist mostly because I wanted to be able to quickly experiment with the mapping algorithm....

Are you running this on your laptop or perhaps on a cluster node where only one CPU core is available to you job? Are other multi-threaded programs able to use...

I don’t know what is going on. - How do you tell that the CPU usage is one core only? Is it at exactly 100%? - Try leaving out `--info-file`...

Awesome! > @marcelm Would it be prudent to yank 4.3 from PyPI? I don’t think that’s necessary. `pip install cutadapt` won’t pick it and if 4.3 has made its way...

We dodged that one!