marcasriv

Error when running mmseqs createsubdb: sh: 1: Syntax error: ")" unexpected

7

Hi, I'm interested in running PhyloCSF++ with annotate-with-mmseqs on Chinese hamster, but I am getting an error when it reaches the _mmseqs createsubdb_ step: ` ./phylocsf++ annotate-with-mmseqs --threads 35 --output...

Determination of uniformity and periodicity thresholds

1

Dear authors, I've a question related to the procedure that you followed to classify translated and untranslated ORFs after finishing running ORQAS. How do you exactly determine the cut-off values...

Hi, I was wondering if it will be possible to identify C-terminal extensions using RiboCode. I've noticed that N-terminal extensions / truncations are indeed identified by RiboCode (they fall in...