ModDotPlot
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marbl
Is it possible to generate an All vs All dotplot with ModDotPlot? When I run `moddotplot -i Asm_A.fasta Asm_B.fasta --compare` I'm just getting a single dotplot of contig_1 vs contig_2...
Hi, I was wondering if there was a way to make the static plot for two separate sequences? As I understand it right now, it checks the identity of a...
Hi, Alex It's so nice to see tons of updates on `ModDotPlot`. I have a question about the interactive mode. For most plant genomes, its centromere/HOR region is unknown, it...
Dear author, Thanks for developing this nice visualization tool! I am trying to make a plot between two sequences. The dotplot below is obtained with simple k-mer matches. But when...
Related to the https://github.com/marbl/ModDotPlot/issues/29 I thought to investigate by using test sequences. I take a sequence from arabidopsis chr1 and copy paste a sequence 3 times, ``` %%writefile ../tmp/seq1.fa >seq1...
Dear Alexander, Thank you very much for developing such a nice tool. I am using it to visualize the centromere repeats and it works very for most of the sequence....
Hi thanks for the great tool! I am testing it and I noticed a difference and it got me confused. I looked at https://github.com/marbl/ModDotPlot/issues/22 but it I downloaded moddotplot last...
Hi developers, I am recently use ModDotPlot to visualize CHM13 chr1, and I found a curious thing. `moddotplot static -f CHM13#chr1.fa -o CHM13#chr1 -k 50 -id 90`  `moddotplot static...
Thank you for developing such excellent software. The following figure shows a chromosome with a length of 3.5Mb. I found that the region around 2.5Mb is what I need, and...
When installing the project via `pip install .` or `pip install moddotplot`, the dependency `svgutils` is not automatically installed. This results in a `ModuleNotFoundError: No module named 'svgutils'` during execution....
