Mash
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marbl
Fast genome and metagenome distance estimation using MinHash
Just wondering if you have any tips for making your own database. Specifically can you use a multifasta file with different species and strains to make the database or are...
Would you help me? when i installed the mash ,going the "make" step (base) [liqingmei@ln01 Mash-master]$ make then /data/liqingmei/tools/Mash-master/src/mash/capnp/;capnp compile -I @capnp@/include -oc++ MinHash.capnp /bin/sh: capnp: command not found make:...
mash seems to just give us the probability of the genome not abundance information. we need composition (% or abs abundance) info that we need for our analysis. Can you...
Is there any possibility to input sketches for mash screen as the "mixture" input? If no: 1) Is this not possible for algorithmic reasons? 2) Is this just not implemented...
Hello! I'm trying to use Mash to assess genetic distance between several distant plant species. We have them sequenced by Illumina and I've used Mash to sketch my read files...
This might be more of an inquiry that an issue. I am currently interested in how two sketches are compared. Judging from [the code](https://github.com/marbl/Mash/blob/master/src/mash/CommandDistance.cpp#L347-L365) the *hashes* are compared, not the...
I have used mash dist a lot, with good results. Now I want to use mash screen, and find that here I sketch the genomes, but not the metagenome? It...
When I try to make, the import in MinHash.capnp fails. I have confirmed that the file exists at the location it is saying that the import fails. I have capnproto...
As it is now it is not feasible to run `mash screen` with 100K mixtures because one needs to launch mash 100K times. `mash dist` has support for multi-fasta files...
Hello, would be possible to have a filter for the output that filters out from the output the lines that have the distance below a given threshold (for `mash dist`)?...