Krona
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marbl
Interactively explore metagenomes and more from a web browser.
I ran a prediction analysis using the PGPT-Pred service at https://plabase.informatik.uni-tuebingen.de/ and they provided me a link to krona plot. I was wondering could i export the raw data from...
We use Kraken (now kraken2) for a lot of our analysis, and it would be great if there was a way to read kraken2 data in to kronatools. There probably...
Dear All, I searched for a solution here but I could not find it. I feel my problem would be very simple, however, I am just starting to use the...
Hi, I was running the command line ktTextImport for this test file: no. phylum class order origin 1 Bacteroidetes Bacteroidia Bacteroidales chromosome 1 unknown unknown unknown chromosome 1 Bacteroidetes Bacteroidia...
I am trying to merge multiple krona plots into a single plot. ktImportKrona -c S1.krona.html S2.krona.html -o krona.merged.html However, this is not working. Can anyone help with this? This merging...
After untarring `KronaTools-2.8.1.tar` and running `./install.pl --prefix .` I have the following in `bin`: ```console $ ls -l bin/ total 0 lrwxrwxrwx. 1 aorth aorth 49 Mar 14 12:08 ktClassifyBLAST...
With 2.8.1 there seem to be options for turning on display of no hits (include option), but it seems it is on by default....is there a way to hide "No...
Hi, I used KronaTools-2.8.1 which was installed locally, not by conda. And I encountered the following error. ``` $ ktClassifyBLAST -p -s blast_result.txt -o test.csv Loading taxonomy... Classifying blast_result.txt... ERROR:...
I have just created a Github repo containing some useful code for using Krona charts from R and phyloseq (creating, embedding in RStudio and R-Markdown HTML/PDF/...). (https://github.com/markschl/embed_krona). To allow for...
When I run updateAccessions.sh (both locally and on an HPC server) i get this error message: "Update failed. Is your internet connection okay?". I tried to download accession files to...
