MBG
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maickrau
Hi, I was running verkko on some ULONT reads corrected by herro (https://github.com/lbcb-sci/herro). Although they are quite different from hifi reads but most runs using verkko and hifiasm have been...
Hello again! I have another issue. It's repeatable - I have 3 different datasets failing with the same error. Here is the error message from the same dataset as in...
I split the existing CXXFLAGS into multiple lines, added a few -Wno options, and removed redundant -lpthread from the link. The rest of the changes are pretty simple. Compilation: -...
`MBG bioconda 1.0.16` Hi, - I am testing MBG on an organellar genome and noticed the results can change if you run the program multiple times. I couldn't find a...
I ran MBG v1.0.14 with the same input corrected HiFi reads, the first run used `--unitig-abundance 2` while the second one used `--unitig-abundance 4`. The run with the higher abundance...
Installing on HPC with no root. CentOS. make bin/MBG g++ -o bin/MBG obj/MBG.o obj/fastqloader.o obj/CommonUtils.o obj/MBGCommon.o obj/FastHasher.o obj/SparseEdgeContainer.o obj/HashList.o obj/UnitigGraph.o obj/BluntGraph.o obj/HPCConsensus.o obj/ErrorMaskHelper.o obj/CompressedSequence.o obj/ConsensusMaker.o obj/StringIndex.o obj/RankBitvector.o obj/UnitigResolver.o obj/UnitigHelper.o obj/BigVectorSet.o...
Hello. Thank you for building this resource. I am running verkko on some plant HiFi reads and I received this error: ``` MBG: src/UnitigResolver.cpp:707: std::pair resolvableToUnitigs(const ResolvableUnitigGraph&, const std::vector&, const...
In the new_mbg/bonobo folder, there are 36 t2t scaffolds in the original MBG version vs 24 w/new. The files t2t_scaffolds_by_chr list the t2t scaffolds and their chromosome IDs. These both...
Hello, I'm getting this error when compiling on my M1 Mac: ```console src/RankBitvector.cpp:9:10: error: unrecognized instruction mnemonic __asm__("popcnt %0, %0" : "+r" (x)); ^ :1:2: note: instantiated into assembly here...
