make: *** [makefile:37: bin/MBG] Error 1

[theo-allnutt-bioinformatics]

Installing on HPC with no root. CentOS.

make bin/MBG g++ -o bin/MBG obj/MBG.o obj/fastqloader.o obj/CommonUtils.o obj/MBGCommon.o obj/FastHasher.o obj/SparseEdgeContainer.o obj/HashList.o obj/UnitigGraph.o obj/BluntGraph.o obj/HPCConsensus.o obj/ErrorMaskHelper.o obj/CompressedSequence.o obj/ConsensusMaker.o obj/StringIndex.o obj/RankBitvector.o obj/UnitigResolver.o obj/UnitigHelper.o obj/BigVectorSet.o obj/ReadHelper.o obj/Serializer.o obj/DumbSelect.o obj/MsatValueVector.o obj/Node.o obj/KmerMatcher.o obj/main.o -Wall -Wextra -std=c++17 -O3 -g -Izstr/src -Iparallel-hashmap/parallel_hashmap/ -Wno-unused-parameter -Icxxopts/include -Iconcurrentqueue pkg-config --cflags zlib -Wl,-Bstatic pkg-config --libs zlib -Wl,-Bdynamic -Wl,--as-needed -lpthread -pthread -static-libstdc++ /bin/ld: cannot find -lstdc++ collect2: error: ld returned 1 exit status make: *** [makefile:37: bin/MBG] Error 1

[skoren]

That looks like your g++ compiler is broken, it's reporting the standard library as missing. You can use the conda manager to install MBG instead if you are having trouble compiling.