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                                            mAGLAVE

snaptools align-paired-end fail to open bam file

The problem seem to come from the python version for samtools. With python3.5 and --if-sort=True : problem! With python3.5 and --if-sort=False : no problem. With python2.7 and --if-sort=True : no...

Xenome not terminate and not report statistics

Hello, I had this problem as well. I found this version of gossamer https://github.com/cancerit/gossamer , where they fixed the problem in a not very basic way but it is effective.