m0nib

Hi, I had the same issue when using the default hlc data set. i googled a bit found a solution that worked for me, not sure if its a solution...

Hi, i am trying to run the gpu pipeline using my dataset that contains `adata.X.shape` (645559, 66696). I am running this on my local machine that has 80GB ram and...

I see. How did/do you change this ? Is there a command, setting or function call option I have to set for this? Thank you

@Intron7 It’s a human lung cell atlas dataset. I have a subset with the disease on interest. I collated 4 datasets as well as the hlca and want to do...

> Recently a multi-GPU version of the notebook was added to the examples. > > https://github.com/clara-parabricks/rapids-single-cell-examples/blob/master/notebooks/1M_brain_gpu_analysis_multigpu.ipynb > > This allows much larger datasets. Please check if this helps. Hi @rilango...

Got it working, had to provide a directory containing with both ref.rds and idx.annoy. If the ref and idx names are changed the shinny app does not pick it up....