Lukas Mueller

Expected Behavior -------------------------------------------------------------------------- The randomization should allow 4 replicates of all accessions across 5 environments. This is from an R package: https://cran.r-project.org/web/packages/FielDHub/vignettes/sparse_allocation.html For Bugs: --------- ### Environment #### Steps to...

Standardize service for image analysis

4

On Breedbase, one or more images can be submitted to an image analysis server with a RESTful interface. The server returns analyzed images (for example, highlighting what it detected) along...

Upgrade R in non-docker systems

1

Expected Behavior -------------------------------------------------------------------------- - [x] Cassavabase - [x] Musabase - [ ] MusabaseQUT - [x] Sweetpotatobase - [x] Yambase - [x] SGN - [x] Cluster - [ ] and related...

Expected Behavior -------------------------------------------------------------------------- For Bugs: --------- ### Environment #### Steps to Reproduce

link genotyping markers to alleles

1

Expected Behavior -------------------------------------------------------------------------- add a linking table to phenome schema with the following structure: table name: allele_marker columns: ``` allele_marker_id bigint primary key, nd_protocol_id bigint references public.nd_protocol, markers jsonb ```...

explore statgenSTA package for Breedbase

1

Expected Behavior -------------------------------------------------------------------------- statgenSTA is an R package with lots of breeding data analyses For Bugs: --------- ### Environment #### Steps to Reproduce

Expected Behavior -------------------------------------------------------------------------- Allow comma separated list of populations. Currently, it doesn't split with comma and creates a new, comma containing population name For Bugs: --------- ### Environment #### Steps...

fix user trait addition issues

2

Expected Behavior -------------------------------------------------------------------------- When user trait addition is enabled (in sgn_local.conf) it errors out when users are trying to add a new term For Bugs: --------- ### Environment #### Steps...

Expected Behavior -------------------------------------------------------------------------- For Bugs: --------- ### Environment #### Steps to Reproduce

Description ----------------------------------------------------- bin/rename_locations.pl Checklist --------------------------------------------------------------------------------------- - [ ] Refactoring only - [ ] Documentation only - [ ] Fixture update only - [ ] Bug fix - [ ] The...