Lukas Mueller

Tool for creating rootstock / scion entries

2

Expected Behavior -------------------------------------------------------------------------- Tool for creating rootstock / scion entries should take an excel file with two columns, scion and rootstock, with accession identifiers. It should create a new accession...

Expected Behavior -------------------------------------------------------------------------- For Bugs: --------- ### Environment #### Steps to Reproduce

Expected Behavior -------------------------------------------------------------------------- For Bugs: --------- ### Environment #### Steps to Reproduce

Support multiple trait ontologies

1

Expected Behavior -------------------------------------------------------------------------- For Bugs: --------- ### Environment #### Steps to Reproduce

Expected Behavior -------------------------------------------------------------------------- This is in the file based upload For Bugs: --------- ### Environment #### Steps to Reproduce

Do outlier filtering on the level of a dataset

1

Expected Behavior -------------------------------------------------------------------------- For Bugs: --------- ### Environment #### Steps to Reproduce

Calculate global relationship matrices for each genotyping protocol

1

Implement a cronjob type job that re-calculates relationship matrices for genotypes, per protocol.

Genotype upload verification tool

3

Expected Behavior -------------------------------------------------------------------------- After a genotype upload, need to verify that everything is correct in the database. By nd_protocol or by nd_file uploaded should do summary statistics and spot checks...

Create auditing system

3

Expected Behavior -------------------------------------------------------------------------- Implement backend that can track changes to the database For Bugs: --------- ### Environment #### Steps to Reproduce

Expected Behavior -------------------------------------------------------------------------- The download of large genotyping datasets takes too long for https. We need an asynchronous download that allows people to access the data later (using an email...