Upgrade R in non-docker systems

[lukasmueller]

Expected Behavior

• [x] Cassavabase
• [x] Musabase
• [ ] MusabaseQUT
• [x] Sweetpotatobase
• [x] Yambase
• [x] SGN
• [x] Cluster
• [ ] and related test servers
• [x] Cassava-test
• [ ] Musabase-test -- can't ssh to it.
• [x] Sweetpotatobase-test
• [ ] Yambase-test -- is it on docker???
• [x] SGN-test
• [x] Cluster-test

For Bugs:

Environment

Steps to Reproduce

[isaak]

-- On all the checked systems: R upgraded to 4.4; R_libs set to topic/debian_bullseye_R4.4.

--MusabaseQUT has ssh authentication issues --musabase-test...seems to be down. Can't ssh to it...it is not responsive. --yambase-test...not sure if it is on docker or not...

[lukasmueller]

Updated R in Musabasequt yambase-test is docker-based musabase test is up and updated