Luiz Irber

Results 71 comments of Luiz Irber

I have a bunch of commits in #2230 that flip the MinHash to default to large ones (b-tree based) and expose the Frozen ones (vec-based), should I add the commits...

I tested out with the pile of changes coming in #2230 and it works. In the future might want to avoid all the copying, but as you pointed in the...

> awesome, thanks!! should I merge, then? Yup, go for it!

some solutions while we don't move everything to [R2](https://www.cloudflare.com/r2-storage): remove `https://dweb.link/ipfs/` from download URL - for `genbank-2022.03-viral-k21.zip`: `https://dweb.link/ipfs/bafybeicjyx6qkhdtw6q4cxs6fyl46gqfhd4q5eqje5lkswf2npljnyytzi` -> `bafybeicjyx6qkhdtw6q4cxs6fyl46gqfhd4q5eqje5lkswf2npljnyytzi` with the cloudflare gateway: - `wget -O genbank-2022.03-viral-k21.zip https://cloudflare-ipfs.com/ipfs/bafybeicjyx6qkhdtw6q4cxs6fyl46gqfhd4q5eqje5lkswf2npljnyytzi` with...

Hmm. I wonder if there was any issue when uploading the bacteria DB, the copy I have here (and was the one used for the upload) doesn't generate these errors...

I reuploaded it and it was the same IPFS hash (so I don't think the upload failed), but the MD5 for my local file doesn't match yours! ``` $ md5sum...

Seems like https://dweb.link is quite slow, one alternative is to use another gateway (like https://cloudflare-ipfs.com) to download it (still slow, but faster...). Command for this option: `wget -c https://cloudflare-ipfs.com/ipfs/bafybeie3eyyectnh5xqxz44oa3qj5vura3bffqdwfqk6jjuzzadkh7e2sq` If...

I got `c7ef7c815a00337a7252ab49ffab3e8b` as MD5 with `ipget`, I'll leave `wget` running and report back when it's done. But I think your download might be corrupted =(

I'll try it, I think all deps are available in conda-forge

https://github.com/bioconda/bioconda-recipes/pull/24326 issues to solve: - versioning. bioconda will accept a git SHA, but a tag is preferred. - run tests on built package