Artem Tarasov

Inconsistent @RG handling in mpileup BCF vs text output

4

Hello, `mpileup` text output doesn't group samples indicated by `@RG` tags. Please see an example in this (rather old) thread: https://www.biostars.org/p/88323/

[feature request] document counting

9

In [PrivVG](https://github.com/privvg) project, document frequencies will be necessary in order to satisfy the differential privacy definition (a single new document might inflate counts a lot if it visits the same...

https://github.com/pezmaster31/bamtools/blob/master/src/toolkit/bamtools_convert.cpp#L599 Because of conversion from signed `char` to `uint16_t` if value is >= 128, the result is wrong. (Sorry, I'm too lazy to fork & pull for one-line fix.)

Distributing PyD-produced binaries

6

Hello, I figured this issue tracker is a good place to spark this discussion. Let's imagine that someone fiddles enough with PyD to create something useful. How is the produced...

Это приводит, например, к тому, что не все похожие исполнители кликабельны: 1. Заходим на http://player.vas3k.ru/#artist:Янка+Дягилева 2. В списке справа отображается Веня Д'ркин. Кликаем по нему → FAIL.

MPRIS widget improvements

2

- fixed the arcchart to actually reflect the progress - added an imagebox in the popup to show cover art - added user_args to allow overriding various settings 

Add a covering index on tracks (album_id, length)

8

The [covering index](https://www.sqlite.org/queryplanner.html#_covering_indexes) also includes length, so that SQLite can avoid reading the rows. In my experiments with the DB provided by @cascooscuro (see https://github.com/sentriz/gonic/issues/478), adding this index already helps...