Artem Tarasov

This would be nice to have, but disabling batching on the client is just too easy to put any effort here. An error message would be good, though, as it's...

I'm stuck with the same problem, although I swear I had dstep working successfully on the same codebase just a couple of years ago (many thanks for that!) I'm using...

FWIW, I almost never cared about i386 architecture, as it's very tough to process data being limited by 4GB. (Edit: I've just removed myself from BioD organization and this repo...

Thanks for all the details. Calculation of number of bases per region in mate overlap scenario is apparently buggy, which is not really surprising as it's a quite complex bit...

NordVPN still hasn't released config files for wireguard, so NordLynx is only available via their closed-source app.

Thank you for the swift response! Yes, I now see that in case of GCSA2, both alphabet size and suffix lengths are much smaller compared to GBWT. Luckily, the last...

I assume you are referring to ["Sampled Longest Common Prefix Array"](https://arxiv.org/pdf/1001.2101.pdf)? Beller et al's algorithm (queue-based) can be tweaked to use `O(#runs)` construction space using very similar ideas, please take...

Fair enough. I briefly checked current lock-free queue landscape, but I don't think they are going to cut it either (best implementations achieve throughput around 10M operations/second in balanced enqueue/dequeue...

Yes, this one. I also looked at https://github.com/mpoeter/xenium. That said, I only looked at the benchmark results and have no hands-on experience. Overall I agree that the simplest solution is...

Is `-rdynamic` the only possible workaround? Quick googling shows that many solve this problem just by adding `dlopen("libpython.so.1", RTLD_LAZY | RTLD_GLOBAL);` before `Py_Initialize()`