Yuelong Chen

Hi @ploy-np , I am also interested in the `model_kmer.csv`, as you mentioned which was got from nanopolish output. Do you mean run `nanopolish eventalign` and then statistics the results?...

I am also interested in this application in microarray data. Looking forward to your comment @xuranw. I think @xuranw had stated something like microarray data can't be used to infer...

Same issue here.

Hi @xiaoyaohao , Thanks for providing help. I am wondering if you could make a PR to fix this issue or you could provide your modified forks? best,

> In case someone finds it helpful, I was able to solve the issue by reducing the number of columns in the metadata of the original .h5ad file. I'm not...

Hi @Wenfei-Sun , Because you have already had "Unknown" item in your categories, you could modify the command to ``` for col in adata.obs.columns: adata.obs[col]=adata.obs[col].cat.add_categories("selfdefinedNA").fillna('selfdefinedNA') ``` Which will solve you...

I have the same question, but I found a few steps former for that ``` Traceback (most recent call last): File "/wes/chenyl/projects/MToolBox/MToolBox/assembleMTgenome.py", line 443, in mut_events = mtvcf_main_analysis(mt_table, sam_file, sample_name,...

I have the same requests here.

Hi @lh3 , I have figured out how to do it by modifying some of your python codes. May I ask if I should make a PR or just keep...

Hi @smf96 , @lh3 has already pronounced the limitation of this kind of issue, [here](https://github.com/lh3/minimap2/blob/master/README.md) for you to refer to. I think if you don't want miss this kind of...