Luis M Rodriguez-R

BTW, when I deploy the exact same application in a root location (using either Puma or Passenger) everything works.

Hello @blancaverag, I'm sorry about this, I realize now that the documentation is incomplete for this script. The issue is that you must use the name of the genome in...

I believe the problem is missing libraries on your machine. Which OS are you using? If you have apt-get you can do: ```bash sudo apt-get install libopenmpi-dev ``` Note that...

Hello @geboro , No, there isn't, but it'd be easy to implement so I'll mark this as a request and I think I can get a push with the change...

Sorry for the loooong delay, I'm back now at tending to the issues. I believe this is an issue on the kmer kernel, that doesn't allow gzipped input due to...

@gunturus Do you have an update on this issue? I know you were looking into it. Thanks!

Hello. We're finally back at this issue, and it's top of the roadmap. An initial _not-so-clean_ solution would be to unzip the files into a temporary directory, launch nonpareil, and...

Thanks for bringing this up to our attention! I have now implemented consistency with `-r` when using `-T alignment`. Note that it may still produce slightly different results with different...

Dear Dot, We're in the process of implementing the automated detection of identity thresholds, and it took longer than expected. However, you can use the script by setting a fixed...

Hello @snayfach Thanks! I'm glad to hear the docs/interfaces were clear 😃 Yes, you're correct. The diversity estimate is stored in the `diversity` slot of the `Nonpareil.Curve` object. You can...