lizhan96
lizhan96
Dear developer I want to call CNV with my tumor sample(array data), and the normal-pair sample i had. When I run the MoChA pipeline, some hg19/hg39 related files was needed....
hi there, I have successfully run the phase pipeline. but it's seem that the Chromosomal alterations pipeline guileline was only described for the WGS data but not array data? Could...
After I install bcftools, I follow the README document and run the following code, but there is a error message. `path_to_output_folder="..." cel_list_file="..." apt-probeset-genotype \ --analysis-files-path . \ --xml-file GenomeWideSNP_6.apt-probeset-genotype.AxiomGT1.xml \...
hi, devoloper. After I install bcftools-1.11 and gtc2vcf, I run the following code `/data_6t/lizhan/02.software/bcftools-1.11/bcftools +affy2vcf \ --no-version -Ou \ --csv $csv_manifest_file \ --fasta-ref $ref \ --chps $path_to_chp_folder \ --snp $path_to_txt_folder/AxiomGT1.snp-posteriors.txt...
``` > kegg_enrich No gene can be mapped.... --> Expected input gene ID: --> return NULL... ``` 我分别尝试使用symbol,entrezid作为输入都没有得到结果,此处“Expected input gene ID: ”也没有提示相应输入格式,是否是相关库下载出问题的原因?