ERROR in converting CHP to VCF

[lizhan96]

hi, devoloper. After I install bcftools-1.11 and gtc2vcf, I run the following code /data_6t/lizhan/02.software/bcftools-1.11/bcftools +affy2vcf \ --no-version -Ou \ --csv $csv_manifest_file \ --fasta-ref $ref \ --chps $path_to_chp_folder \ --snp $path_to_txt_folder/AxiomGT1.snp-posteriors.txt \ --extra $out_prefix.tsv

but there are some error message.

Writing to ./bcftools-sort.ribgu4 /data_6t/lizhan/02.software/bcftools-1.11/plugins/affy2vcf.so: dlopen .. /data_6t/lizhan/02.software/bcftools-1.11/plugins/affy2vcf.so: undefined symbol: set_wmode affy2vcf: dlopen .. affy2vcf: cannot open shared object file: No such file or directory

The bcftools plugin "affy2vcf" was not found or is not functional in BCFTOOLS_PLUGINS="/data_6t/lizhan/02.software/bcftools-1.11/plugins".

• Is the plugin path correct?

• Run "bcftools plugin -l" or "bcftools plugin -lvv" for a list of available plugins.

Could not load "affy2vcf".

[freeseek]

The current code for the affy2vcf plugin requires BCFtools version 1.14 or newer.