linshengnan09

About output files

2

Hi, I had a questions about INS annotations in the output vcf file, as shown below:  The same as the insertion type, why the first line did not give...

with HIC mode

4

Hi, I want to run hic mode but I don't how to set parameters when I have two HIC libraries. Thanks!

[bowtie_pairing] Error 1

28

Hello! l installed hic-pro by conda , but the step "Pairing of R1 and R2 tags ..." is always wrong, can you tell me how to solve this problem? Thank...

run partition.pl error

10

hi, when I run the perl script partition.pl following the tutorial, I met a error: Use of uninitialized value $ctg in hash element at ~/01_software/ALLHiC/scripts/partition.pl line 66, line 11. Use...

Abnormal size of *.0.hic

5

Hi, I run 3d-dna with a 4.17G genome, but I got a abnormal size of *.0.hic, The log file is as follows： ##### ...visualizing round 0 results: :) -p flag...

Hello, I would like to ask why some sites in the output vcf file are not arranged in order？  Thank you!