Lingxin Cheng

Problem in Spatial Umap Plot

1

I was trying the spatial tutorial by copy and paste the same code on the tutorial(https://scanpy-tutorials.readthedocs.io/en/latest/spatial/basic-analysis.html). However, when I run plt.rcParams["figure.figsize"] = (4, 4) sc.pl.umap(adata, color=["total_counts", "n_genes_by_counts", "clusters"], wspace=0.4) I...

Hi, I got this error when running the data_generation_merfish.py. Here is the screenshot: