Pierre Lindenbaum comments

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                                            Pierre Lindenbaum

Lists same file twice

thanks for pointing this out. Unfortunately, I don't have the time to work on this for now.

show more details about libs

> 1-instead of CMAKE why do you speak of cmake ? > but how can I run this on root of project? if I understand what you meant this tool...

Pattern rules with multiple targets not shown

Thank you for this report ! I'm afraid I won't have the time to fix this soon.

Sub-Makefile Support

@tommy-u Hi, last time I've checked, the output was too complicated to be parsed. Fee free to try :-)

Merging requires much memory. Is there a way to split the json output ?

@egor-dolzhenko thank you very much ! I won't be able to use your new version before next week.

Merging requires much memory. Is there a way to split the json output ?

@egor-dolzhenko hi , Thank you for the new binary. I tested it with ~400WGS and `--min-unit-len 3` . Computing the 'merge' was much faster ! I've forwarded the results to...

taxon2newick.xsl: parser error : Extra content at the end of the document

I don't have the NCBI tools here. You could just grep'ping out the XML header (xsltproc should work). `grep -vF '

taxon2newick.xsl: parser error : Extra content at the end of the document

by the way , you can speed up things by adding `--novalid` in the args of xsltproc.

Use gradle default dependency management and create shadow/fat jar by using existing tools

@circlesmiler Hi, I've never been able to use/learn gradle, I must be too old. At first the java programs were standalone and generated using a Makefile, I then moved to...

tview is not included in the docker

@gudedsh Hi, sorry about this, I don't plan to update docker (I haven't updated it for years) and I'm afraid I forgot to include it in "big" java archive. I've...