Pierre Lindenbaum

Hi all, is there anything new about this old PR ? I'm working more and more with intermediate uncompressed BCF files and I would love to handle this with htsjdk...

Hi, `biostar139647 ...` this is not the correct way to run the command. It should be something like `java -jar jvarkit.jar biostar139647 .... ` see the documentation. https://jvarkit.readthedocs.io/en/latest/Biostar139647/ if it...

You're using a fasta reference file that is different from the one that was used to map the bams.

Hi, thank you for the review. FYI I currently don't have the time to work on this. I'll fix things later.