seqtk
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Toolkit for processing sequences in FASTA/Q formats
I am getting an odd FastQC error when reading in more than one of my seqtk sub samples. I ran, for e.g.: seqtk sample -s100 TP29441.fastq.gz 10000 > ../sub_fq/TP29441_10k.fastq if...
Respect variables already defined and support temporary path $(DESTDIR) to install into.
This adds a 'max len' filter to the seq subcommand, to match the existing `min len` filter.
I have been creating mock community samples using ``seqtk sample`` on some single isolate inputs, something like this: ``` rm -rf tempR1.fastq tempR2.fastq for sample in A B C; do...
Hi, I learned that seqtk can filter the minimum read length. For example, if I want the minimum read length to be 250 bp, the code will be: `seqtk seq...
Dear author I encountered a problem when I use seqtk to downsample fastq file ，the result look like this：  Is there any way that I can do to solve...
Bioconda now setups up a number of environment variables to correctly compile code on different platforms. To play nicely, and compile correctly, the Makefile should make use the LDFLAGS environmental...
I have a pair of FASTQ files so that the paired-end reads no longer line up. I pair them up and drop the orphaned reads like so: ``` sh cat...
