miniprot

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Hi @lh3, many thanks for developing Miniprot! I was wondering if Miniprot could also be (ab)used to search for very short sequences/peptides (say, even down to 8AA) in large genomes....

andreas-wilm

Filter out very long intron gene (max intron size)

6

Hi, @lh3 It seems a lots of long-intron protein mapping in the `miniprot` result, can we use some parameters to filter out these? Its size smaller than the default `-G`...

baozg

Mapq

5

For proteins mapping to multiple contigs/chromosomes, how might one deduce the equivalent of mapping quality with miniprot? My guess is one could have a go at AS and as scores...

jelber2

Coding exon limit

1

Does it work will with super short exons like a single codon in length?

husamia