kmer-cnt

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I am wondering how to compile and run the codes on Windows.

Scilence2022

Hi @lh3 I noticed a little problem when counting 32 mers. Given the sequence: > AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT ``` ./kc-c1 -k 32 seq.fa | head 1 0 2 1 3 0 4...

7PintsOfCherryGarcia

Is there a fastest way to ouput the unique kmer sequence ? not only output the kmer count

1

let kh_val(h)=y when put the key into hash?

xiongxu

Hi again :) Quick question, the use of `hash64()` before inserting into any of the `h->h` tables done for ensuring an even distribution of kmers among the ensemble?

7PintsOfCherryGarcia

Hello, I was looking to test a simple kmer counter I wrote , but the dataset link isn't working https://ccb.jhu.edu/gage_b/datasets/index.html Is there another place I can get them, or and...

Psy-Fer

for '-k32', the hist count suggest all kmers are the same string. Using the code from #1 to dump kmer string, all kmer key is 0 or "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA".

galaxy001